DreEX0017349 @ danRer10
Exon Skipping
Gene
ENSDARG00000102802 | brdt
Description
bromodomain, testis-specific [Source:ZFIN;Acc:ZDB-GENE-030131-5928]
Coordinates
chr6:24279059-24282291:-
Coord C1 exon
chr6:24282163-24282291
Coord A exon
chr6:24280461-24280620
Coord C2 exon
chr6:24279059-24279147
Length
160 bp
Sequences
Splice sites
3' ss Seq
TTGTCCCCCTCCCTGAACAGGCA
3' ss Score
11
5' ss Seq
CAGGTTAGG
5' ss Score
6.25
Exon sequences
Seq C1 exon
TTGAAACTGATGGGGAGATTAAAGACACGACCCATCCTTCTCGTCTGAGTGACAGCAGCAGCAGCTCGTCCAGCTCTGACAGCAGTAGTAGTGACTCTAGCTCCTCTGATAGCTGTGACTCTGATTCAG
Seq A exon
GCATTGCGGCAGGCCAATGCTGAGGTAAAGGACTCTTCTTCTGCCTCAGGCGTGATGTGCCAGTCTCGCCCATCCTCACTAGTCTCAGAGACAGGCTCCAAAGACCTGTTTGCATCACAACACGCAAAGCATCCTGTCGAGGACATCACAGCAATCACAG
Seq C2 exon
GCATCCCACCACTTCTGTCACCTTTGACCTCACCTTCTGCAGCCATGCCTGCCACAGGATCCCAGTCTACCTCCAGTTCCCAGTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102802_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF057937=TFIIF_alpha=FE(17.7=100),PF045028=DUF572=FE(18.1=100),PF027249=CDC45=FE(28.5=100)
A:
PF057937=TFIIF_alpha=FE(21.8=100),PF045028=DUF572=FE(22.3=100),PF027249=CDC45=PD(17.9=50.0)
C2:
PF057937=TFIIF_alpha=FE(11.9=100),PF045028=DUF572=FE(12.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAAACTGATGGGGAGATTAAAGAC
R:
CTCAAACTGGGAACTGGAGGT
Band lengths:
218-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]