DreEX0017769 @ danRer10
Exon Skipping
Gene
ENSDARG00000015065 | c4
Description
complement component 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5697]
Coordinates
chr15:32503742-32508078:-
Coord C1 exon
chr15:32507923-32508078
Coord A exon
chr15:32504301-32504360
Coord C2 exon
chr15:32503742-32503832
Length
60 bp
Sequences
Splice sites
3' ss Seq
ATGTGCACTTGTTTACACAGGTC
3' ss Score
8.83
5' ss Seq
GCCGTAAGA
5' ss Score
5.75
Exon sequences
Seq C1 exon
GATACAGTTTTGGCCCTTGAAGCTCTGACAAAATACAGCATACAGAACAATGATGTTGACGATCTGAATCTGAGGGTAGAAATGTGCCTTGAAAATGGCCAAAAAAAAGATTTGCACTTGACCAAAAATAATGCTCTCACTCTCTCAGCTGTGAAG
Seq A exon
GTCAGAGATGTTGGGAAAGTTACCCTAAACATTCAGGGAACAGGACGGGGAACATTAGCC
Seq C2 exon
GTTGTGCAGACGTACAGAACTATGAAGAAGGATGAATCATTCTGTGATCTTTTTCACCTTACTGTCACAGTGAAGGGAGAGCTGGAGTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015065_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PD(5.3=25.0)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACTTGACCAAAAATAATGCTCT
R:
ACTCCAGCTCTCCCTTCACTG
Band lengths:
132-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]