DreEX0018191 @ danRer10
Exon Skipping
Gene
ENSDARG00000078760 | cacna2d3
Description
calcium channel, voltage dependent, alpha2/delta subunit 3 [Source:ZFIN;Acc:ZDB-GENE-030616-133]
Coordinates
chr11:36452841-36457090:-
Coord C1 exon
chr11:36457016-36457090
Coord A exon
chr11:36456714-36456761
Coord C2 exon
chr11:36452841-36452924
Length
48 bp
Sequences
Splice sites
3' ss Seq
CTCTGATATATTGCATGCAGGAA
3' ss Score
5.86
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
CTAGGAATACACGGATATGCTTTTGCCATCACCAGTAATGGATATCTCCTGTTGCACCCTGACCTGAGGCCCCTG
Seq A exon
GAATAAAAGCCCATTCATGTGCCTGCCAGGGCTGATCAGAGCACTGAG
Seq C2 exon
TACCAGGAGGGCCAGAAGAGGAAGAAACCCAGTTACAGCAGTGTGGACCTGTCCGAGGTGGAGTGGGAGGACACAGAGGATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078760_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.250
Domain overlap (PFAM):
C1:
PF0274313=Cache_1=FE(24.5=100)
A:
PF0274313=Cache_1=PD(0.1=0.0)
C2:
PF0274313=Cache_1=PD(6.1=21.4)
Main Inclusion Isoform:
ENSDART00000002055fB1621
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATATGCTTTTGCCATCACC
R:
CATCCTCTGTGTCCTCCCACT
Band lengths:
146-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]