DreEX0018197 @ danRer10
Exon Skipping
Gene
ENSDARG00000103810 | cacna2d4a
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4a [Source:ZFIN;Acc:ZDB-GENE-041210-213]
Coordinates
chr4:20520972-20521548:-
Coord C1 exon
chr4:20521493-20521548
Coord A exon
chr4:20521309-20521329
Coord C2 exon
chr4:20520972-20521089
Length
21 bp
Sequences
Splice sites
3' ss Seq
TTCATCTCCATTTGTCACAGCCA
3' ss Score
6.56
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
CCTTTTATTGGACTTCAACATCTACAATCTGTGGCATTCGGATCACTTTACAGAGG
Seq A exon
CCAAGACCTCATTCCATTCAT
Seq C2 exon
CTAGTAAGAAGTTAAAGGGTGGCTTTCTGCAGCCGTGTGACACTGAATATCCCAGCTTCGTCTACGAGCCATCAATCAAAGAAACCAACAGCCTGATCAAGTGTGGGAGATGTCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103810_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF137191=zinc_ribbon_5=PU(79.2=47.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGGCATTCGGATCACTT
R:
TTGATTGATGGCTCGTAGACG
Band lengths:
108-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]