DreEX0018203 @ danRer10
Exon Skipping
Gene
ENSDARG00000023886 | cacna2d4b
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4b [Source:ZFIN;Acc:ZDB-GENE-100422-18]
Coordinates
chr25:18963115-18965327:-
Coord C1 exon
chr25:18965194-18965327
Coord A exon
chr25:18965024-18965041
Coord C2 exon
chr25:18963115-18963273
Length
18 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTTGCTATCAAACAGCTT
3' ss Score
7.48
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
GTTTTTATGCTCATGTCTCCACCCTGGCTGACGTACAGGAGAACGTCATGGAGTATCTTCACGTTTTGAGTCGGCCGATGGTCATCAATCACGACCATGACATAATCTGGACTGAGGCATATATGGACAGTGTG
Seq A exon
CTTCCTAACACTATGGAG
Seq C2 exon
GTGTTCAAGAGCAAGGCTCACAGTCTGCTGTTCATGACGTCGGTGGCCATGCCAGTGTTCAGTAAGAAGAAAGAAACACTTTCTCATGGCATTTTGCTAGGTGTTGTGGGAACTGACATCCCCCTGCTGGAGGTCATGAAACTTGCCCCGCGATATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023886_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF137681=VWA_3=PD(2.4=8.9),PF0274313=Cache_1=PU(8.5=17.8)
A:
PF0274313=Cache_1=FE(5.0=100)
C2:
PF0274313=Cache_1=FE(55.3=100)
Main Inclusion Isoform:
ENSDART00000027465fB1624
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGATGGTCATCAATCACGA
R:
CGACGTCATGAACAGCAGACT
Band lengths:
103-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]