DreEX0018233 @ danRer10
Exon Skipping
Gene
ENSDARG00000001881 | cacnb3a
Description
calcium channel, voltage-dependent, beta 3a [Source:ZFIN;Acc:ZDB-GENE-060221-2]
Coordinates
chr23:14412943-14424230:+
Coord C1 exon
chr23:14412943-14413113
Coord A exon
chr23:14415480-14415526
Coord C2 exon
chr23:14423617-14424230
Length
47 bp
Sequences
Splice sites
3' ss Seq
CATGCCTGACATCTTTGCAGTTC
3' ss Score
6.67
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GAGATGTTTGATGTCATTTTGGATGAGAACCAGTTGGAGGACGCCTGTGAGCATCTGGCTGAATATCTGGAGGTTTACTGGCGTGCCACTCATCTGCCAGGCACCACCCCTCTCAACCCGCTATTGGAGCAAAATTTGATGACCCCACCCTCTGCAATCTCCAGTCTACAG
Seq A exon
TTCTCTGAAACACAGGAATTAATTGAATGAGCACTTGCAAACCTGCG
Seq C2 exon
AACCAGCAGCTGTCGCCTGCCGGGGGTGGAGTGGGAGTGGAGGAGGAGGAGCAGGGAGAGCAGGACAGCCTCATGCCCTCCGACGAGGCCAGTGACTCTCGCTCCCTCCACCGAGGAGGCTCTAGCTCCCTGCATCCCCCAGAGGACGAGGAAGAAGAGGAAGAGGAGGAAGATGATGATTACCAACCCCATCGCCACTCGAACCCCTACCGTGACGTTTACCCACCTAACCGTAACCACCCGGGTGGGATCCACAGTGCTAATGGACACGAGTCACAGGACCGACTCCTGCAGCAGCGAGACTCGCAGGACGGACACAACCAACGTAACAACCGACAGCGCTCGAGAGCCTGGCCGAGAGACAACTACTGACCGGTCAGCTGCAGGAGGGGGTTGAGTTGTGAATTGGGGTGAGGAACTGAAAAAGCAGTGTTAGTGGATGAAGGTTGATGAAAAGATCCTGTCGTTTTCTAAGCTCATGTGGTCGTCATCGTCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001881_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PD(14.0=43.9)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACTGGCGTGCCACTCATC
R:
CTCCTCCACTCCCACTCCAC
Band lengths:
143-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]