DreEX0018726 @ danRer10
Exon Skipping
Gene
ENSDARG00000059965 | camsap2b
Description
calmodulin regulated spectrin-associated protein family, member 2b [Source:ZFIN;Acc:ZDB-GENE-070912-80]
Coordinates
chr2:45517144-45521285:+
Coord C1 exon
chr2:45517144-45517240
Coord A exon
chr2:45517396-45517461
Coord C2 exon
chr2:45521176-45521285
Length
66 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTGCTGGTTGCTCAGAGG
3' ss Score
4.36
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGTCACGTCCTCGTGGATATTCTGTGTCCAGCATATCACTCGCCTCCCTGAACTTAGCAGACAATGAGAGCATCCAATCAGATAAGAGAACATCCAG
Seq A exon
AGGCAGCAGACTGTCTCCTGGTAGTCTGTGTTTCTTTCTGAGCTCTCCTAAAGGGAGAAAGGGAAG
Seq C2 exon
GCCGGAGTCTGCAGAGGGCTTTCTGTCACCCTGTCCTTCTGTTAGTGGAAACGGGGAAAACTGGGAGCTGGAATCAACATCATCCGCAGCATCTAACACAGAATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059965_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.916 A=0.174 C2=0.822
Domain overlap (PFAM):
C1:
PF052626=Borrelia_P83=FE(13.8=100)
A:
NO
C2:
PF052626=Borrelia_P83=FE(15.9=100),PF086836=CAMSAP_CKK=PU(0.8=2.6)
Main Inclusion Isoform:
ENSDART00000083957fB1685
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCAGCATATCACTCGCC
R:
AGATGCTGCGGATGATGTTGA
Band lengths:
168-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]