DreEX0020138 @ danRer10
Exon Skipping
Gene
ENSDARG00000075599 | cdc25d
Description
cell division cycle 25 homolog d [Source:ZFIN;Acc:ZDB-GENE-090313-74]
Coordinates
chr1:54048465-54050701:-
Coord C1 exon
chr1:54050603-54050701
Coord A exon
chr1:54048939-54049053
Coord C2 exon
chr1:54048465-54048655
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCTTTCTCTGCTCAGTGC
3' ss Score
10.05
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTGGCGTCTCTGATCAGAGGTCAGTTTGGTTCTGCAGTGGAGGATTTTCTCATTGTCGACTGTCGTTACCCGTATGAGTACCAGGGAGGACACATTAAG
Seq A exon
TGCTTCCCTGTTCTGCTCCTCTCCAGCGCTGGAGTCTATCTTGTCTGGCTCTACAGGCTATCTTTAGAGCCTACTCTCTGTTTTCTCTCTCTCCCTCCCCCTGTCTCTCTCTCAG
Seq C2 exon
GGTGCAGTAAACCTGTACACCGAGCATCAGGTCCAGCAGGTGCTCCATCAGGCCTCAGCTCAGGTGTCCGTTTCCACCAGCCGGCTGTGTGGACGATCTGCATCTGATTCACTTCCAGAGGACGAGGAGTCGCCGTCACGAAAACTGATCATATTCCACTGCGAGTTCTCATCAGAAAGAGGACCTCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075599_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=PU(22.5=87.9)
A:
PF0058115=Rhodanese=PD(20.0=20.5)
C2:
PF0058115=Rhodanese=FE(48.8=100)
Main Inclusion Isoform:
ENSDART00000109089fB1796
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGGTTCTGCAGTGGAGG
R:
TCTGATGAGAACTCGCAGTGGA
Band lengths:
253-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]