DreEX0020174 @ danRer10
Exon Skipping
Gene
ENSDARG00000104283 | cdc42bpaa
Description
CDC42 binding protein kinase alpha (DMPK-like) a [Source:ZFIN;Acc:ZDB-GENE-120727-12]
Coordinates
chr17:8251961-8261095:+
Coord C1 exon
chr17:8251961-8252054
Coord A exon
chr17:8256491-8256532
Coord C2 exon
chr17:8260895-8261095
Length
42 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCTGGCACGTCGCAGACA
3' ss Score
5.78
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
AGACATTAAGCCAGATAACATCCTCATAGATGTGAACGGACATATTCGACTCGCAGATTTCGGCTCCTGTCTGAAACTCACGGAGGATGGAACG
Seq A exon
ACAGCTCGGCAGGATTTCCCCCCGACTTCTGACAAGAGCAGA
Seq C2 exon
GTGCAGTCGTCTGTTGCTGTGGGCACGCCAGACTACATCTCTCCTGAGATCCTGCAGGCCATGGAGGATGGGAAAGGGAAATATGGCCCTGAATGTGACTGGTGGTCACTGGGTGTTTGCATGTATGAAATGCTCTATGGGGAAACTCCTTTCTATGCTGAGTCCCTGGTGGAAACCTATGGCAAGATTATGAACCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104283_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.643 C2=0.007
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(20.0=93.9)
A:
PF0006920=Pkinase=FE(4.6=100)
C2:
PF0006920=Pkinase=FE(24.7=100)
Main Inclusion Isoform:
ENSDART00000172443fB1798
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTGTCTGAAACTCACGG
R:
GACCACCAGTCACATTCAGGG
Band lengths:
139-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]