DreEX0020176 @ danRer10
Exon Skipping
Gene
ENSDARG00000104283 | cdc42bpaa
Description
CDC42 binding protein kinase alpha (DMPK-like) a [Source:ZFIN;Acc:ZDB-GENE-120727-12]
Coordinates
chr17:8288704-8292361:+
Coord C1 exon
chr17:8288704-8288780
Coord A exon
chr17:8289063-8289101
Coord C2 exon
chr17:8292242-8292361
Length
39 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGTCTGTGATGAAGCGC
3' ss Score
3.87
5' ss Seq
CGTGTAAGC
5' ss Score
5.25
Exon sequences
Seq C1 exon
GTGTCAAGCACCAAGACTCCCAGAATTCCTTCCTGGCATTCCTCAATGCTCCAACCTCAGCTCTGGATCAGTTTGAT
Seq A exon
CGCTCCACTGCCAGTGGGCCGGCTGGTAAAGGCAGACGT
Seq C2 exon
ATTGATTCCATTGATAACTTCAGCCTCTCCAACACACCGTCACGGGAGGAAGATGGAAGATCCCAGGCGACGTCCCACTCTCGCTCGCCCTCTACCACTAGCGACGTGGAGTCTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104283_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.577 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(23.8=100)
A:
PF0157614=Myosin_tail_1=PD(1.9=15.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGCACCAAGACTCCCAGA
R:
GGTGTGTTGGAGAGGCTGAAG
Band lengths:
112-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]