DreEX0020199 @ danRer10
Exon Skipping
Gene
ENSDARG00000019383 | cdc42bpb
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:ZFIN;Acc:ZDB-GENE-030131-3647]
Coordinates
chr20:18533114-18537015:-
Coord C1 exon
chr20:18536910-18537015
Coord A exon
chr20:18534327-18534389
Coord C2 exon
chr20:18533114-18533262
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGTAATCTTGACCATATCAGCAA
3' ss Score
2.52
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GGTGAGCGATGAGAAAGACGCACGCGGCTACCTTCAGGCTCTGGCCTCCAAGATGACAGAAGAGTTGGAGTCTCTGCGCAGCTCCAGTTTGGGATCCAGAACACTG
Seq A exon
CAAGGCCCAGGAGTAAACATCCCAACCCAGAGGTCAATGGTGGCACCTCGAGTGACCAAGCGG
Seq C2 exon
GATCCGTTGTGGAAGGTGCGTCGCAGTCAAAAGCTGGATATGTCTGCCCGTCTAGAGCTGCAGTCGGCCTTGGAAGCTGAAATCCGTGCCAAGCAACTGGTTCACGATGAACTGCGCAAGGTCAAAGCTGCCAACATCTCTTTCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019383_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.762 C2=0.007
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(11.1=83.3)
A:
NO
C2:
PF088265=DMPK_coil=PU(50.8=62.0)
Main Inclusion Isoform:
ENSDART00000049437fB1804
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGTTGGAGTCTCTGCGC
R:
GATTTCAGCTTCCAAGGCCGA
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]