DreEX0021077 @ danRer10
Exon Skipping
Gene
ENSDARG00000002365 | cers5
Description
ceramide synthase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-1740]
Coordinates
chr22:5728244-5732257:-
Coord C1 exon
chr22:5732101-5732257
Coord A exon
chr22:5731135-5731264
Coord C2 exon
chr22:5728244-5728900
Length
130 bp
Sequences
Splice sites
3' ss Seq
TATCTCTTTCTCTTCTGCAGAAC
3' ss Score
11.94
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GATCCTGAACACGACTCTGTTTGAGAGCTGGCAGATCATCGGGCCGTACCCGTCCTGGTGGCTCTTCAACTTCTTGCTGCTGGTTCTGCAGGTGCTACACATCTTCTGGTCGTATCTGATCGCTCGCATCGCCTTCAAAGCCATCGTCAGGGGAAAG
Seq A exon
AACTGGTTTGTCTTTTCCCTCTTTCGCTGGCTAGAAGATGGTTCCTGTCTTTCAGCTTCTCTCCCAATAGAAATCTGTCGCTCTTTCTGCTAGTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTTCAGCT
Seq C2 exon
GTGTCCAAAGATGACCGCAGCGATATTGAAAGCAGCTCTGAGGAAGAAACTGAAACGTCAGGCAAAGAGCGACTCAAATCTGCCTCGCCGCGAGGAGAAAACGGCACTAACGGTCATTTTGGCTCCAAAACTTGGAGCCAAAACCATAGTGAATGGTGACAATTCGTCCTCGTGGCCTTCGCACAAAGAACTCCAGTCCCAGAAATATGGCGTCGGGACTAATTCCTCATCCCCATACCTCACTCCAACAACCAAAAACACCAACTACAACATCCTGCTGCGGGATTCCTGACACTCCATGGTGGCTTTTGAGGAGTTTTGTTTTGTTTTTTTCCATAAAGACTGTACGGCCACTATGAGAAGCTTGTGAAAGAGAGAAACGATTAAATTAGTGATGTTTGCATTCCCTCGTTTCCTGGTTTTGGGAGACGGTTTTTCCTGCTGGAGACTTTCCTCTTCAGATTTTAATGGTTGGATGTACTTGAGTTTCCACATGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002365_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.596
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000011076fB1876
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAAAGCCATCGTCAGGGG
R:
GTCCCGACGCCATATTTCTGG
Band lengths:
244-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]