DreEX0021230 @ danRer10
Exon Skipping
Gene
ENSDARG00000103760 | cfhl2
Description
complement factor H like 2 [Source:ZFIN;Acc:ZDB-GENE-041114-123]
Coordinates
chr22:23708240-23719178:-
Coord C1 exon
chr22:23719023-23719178
Coord A exon
chr22:23718493-23718672
Coord C2 exon
chr22:23708240-23708416
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTCTTATTTTCGTTTTTTAGAGG
3' ss Score
9.47
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGAAGGAAGAATGTGGTGCTTTCCCCAGTGTTCAGAATGGAAAACTTAAACTTAAAGATCAAGAAACCGCTGAAATTGATTGTGATCCAGGATTCATATCAAGTACACCTTCTATAAAATGCAACAATGGTACATGGGAAACACCAACCTGTAACG
Seq A exon
AGGGTGTGAGATGTGGCATTCCTCCATATGTGGATAATTCAGTCATTATTTCTAAACCTGAAGTTGTTTATATACATGGATCAAGTGTTACATACACATGCCGAAGCCCGTTTGTAATGATTGGGAAAAGTACAGTTTTCTGCAGCAATGGAAAATGGGAAGAAACACCAACATGTGAAG
Seq C2 exon
GTGACATCTGCCCACCTCCTCCTTATATTGAAAATGGAAGTCATTTTAGTAGGAATCCAGATGATAAAATGCCTACTGAGGTATACTATGAATGCCAGGCTTACTATGTGCTGAGTGAGAGAAAGCAATATTACAGGTGTGAAAACGGGAGATGGAGAACCCCTCCGAAATGTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103760_MULTIEX1-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.067
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=88.7)
A:
PF0008415=Sushi=WD(100=90.2)
C2:
PF0008415=Sushi=WD(100=91.7),PF090145=Sushi_2=PU(7.6=8.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTTTCCCCAGTGTTCAG
R:
CAGCACATAGTAAGCCTGGCA
Band lengths:
255-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]