DreEX0021233 @ danRer10
Exon Skipping
Gene
ENSDARG00000104205 | cfhl3
Description
complement factor H like 3 [Source:ZFIN;Acc:ZDB-GENE-050208-423]
Coordinates
chr22:23742255-23745172:-
Coord C1 exon
chr22:23744981-23745172
Coord A exon
chr22:23744688-23744867
Coord C2 exon
chr22:23742255-23742434
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTTTTTGATTGTTCCCCTAGGGA
3' ss Score
10.35
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
ATGGTACCTGTCAGGAGCAAGAACTCAAAAAAGTAAAAATTTTGTTTGGATATCCCACCTTCACTTCTCCTTATGAACCTGGACATGTTTTAGTTTTTCAATGCACAGATGACAACATGAGGTTTTACGGTCACCGTGCAATTGAGTGCCAGCCAGATGGGAAGTGGAACTACCCATATCCACAATGTGGAG
Seq A exon
GGAATGTTCAGTGTTCCCAACCAATAAAAAACATGCAATATGTGACAGTGGCAGATATGAAAACTATATACAGCAACTTGGAGATTCTGAGATACACGTGTAATGAACCATACAATCAAATTCCGGATGGTGCTTTGTTGTGTCAAAATGGGCAATGGAATGGAACGTTTGACTGCAGAA
Seq C2 exon
GTCAGACCTGTCCACCACCTCCGTACATTAAAAATGGAGATTACAGCACCATCAGTAAAACTGCTGATAATGTGATCACTGCAGTTTCTTACACCTGCCAGTCTTTCTTTGTGCTTGACAAGCAGCAGGAGAATTATAAGTGTGTGAATGGCATATGGGAAACTCCCCCAAAATGTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104205_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.7)
A:
PF0008415=Sushi=WD(100=90.2)
C2:
PF0008415=Sushi=WD(100=91.8)
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTACCTGTCAGGAGCAAGA
R:
ACTGATGGTGCTGTAATCTCCA
Band lengths:
247-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]