DreEX0021246 @ danRer10
Exon Skipping
Gene
ENSDARG00000105052 | cfhl5
Description
complement factor H like 5 [Source:ZFIN;Acc:ZDB-GENE-050208-782]
Coordinates
chr22:23584104-23586290:-
Coord C1 exon
chr22:23586217-23586290
Coord A exon
chr22:23585948-23586021
Coord C2 exon
chr22:23584104-23584295
Length
74 bp
Sequences
Splice sites
3' ss Seq
CCATCTGTCATGTTTTACAGCTT
3' ss Score
9.94
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
ATTACTCAGAGTCTTCATAAACGCATAGCAAAACAAACAGCCTCAAACATTCACGAATATCTCTTGGAAAACAG
Seq A exon
CTTGAACATGAAAAACTTCAAGATTTTTCTCTTTCTTCTATTAACGATTATGGATGTCCCAACAAATGCTGAAG
Seq C2 exon
AAGTCACTTGTGATGAGCACCAACTCATCAATGTGTACATCTTAATGGGACATCCAGGAGTTTCTGCACCTTATAAACCTGGCCATATCTTAGTTTTTCGATGCACAGATGGGAACATGATGATGTACGGCCACCGATCAATTGAATGCCTGTCAAATGGAAAATGGGATAACCCTTATCCAAAATGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105052_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=PU(1.6=3.8)
C2:
PF0008415=Sushi=PD(96.9=95.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCATAGCAAAACAAACAGCC
R:
CATGTTCCCATCTGTGCATCGA
Band lengths:
173-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]