DreEX0021303 @ danRer10
Exon Skipping
Gene
ENSDARG00000063631 | ch1073-291c23.1
Description
ch1073-291c23.1 [Source:ZFIN;Acc:ZDB-GENE-050208-114]
Coordinates
chr13:232139-237966:-
Coord C1 exon
chr13:237904-237966
Coord A exon
chr13:236558-236632
Coord C2 exon
chr13:232139-232189
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTCTCAATCTCCCTATCTAGTGT
3' ss Score
8.24
5' ss Seq
CAGGTATCA
5' ss Score
7.33
Exon sequences
Seq C1 exon
GAGCGTACAGTCGAGGTCAGCCGCCATCTGAGAGGAAGCAGCACACGCCGCAGTCTAATCCCG
Seq A exon
TGTTTGCCAGAAGAGATTGGACGCACCCCTCGTATGCACGACCTGATTGGTTCTCTGGCAGCAGAAGGCCAACAG
Seq C2 exon
CTCCTGAGTCTGAAGAAAACAAGCCTGTGCCTGAGACGAGCCACACACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063631_MULTIEX1-2/4=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGTACAGTCGAGGTCAGC
R:
CTCGTGTGTGGCTCGTCTCAG
Band lengths:
114-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]