DreEX0021918 @ danRer10
Exon Skipping
Gene
ENSDARG00000010280 | clasp1a
Description
cytoplasmic linker associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-081104-520]
Coordinates
chr9:38468321-38473918:+
Coord C1 exon
chr9:38468321-38468561
Coord A exon
chr9:38469588-38469644
Coord C2 exon
chr9:38473746-38473918
Length
57 bp
Sequences
Splice sites
3' ss Seq
CTGTCCCCTTCCTTCTACAGGCC
3' ss Score
13.01
5' ss Seq
CCGGTAAAC
5' ss Score
4.81
Exon sequences
Seq C1 exon
ACTGGAAAAGAAGCAGCATCTCCGGGCTCTGATGCGAGACTGGGATTGGATGTAGTGGAAGGTGGTCGAACCGCTCTGGATAACAAGACCTCTCTTCTCAACACCCCGTCCCCGCGGTCTTTCGCTGGGCCCCGGTCCAGAGAGTTTGCACCCTACGGCTATGGAGACACAATCACAGCCTATGATAAAAGTGCCCTGAAAGAGGCCGTCTTTGATGACGATGTGGAGCAGTTCAGAGACT
Seq A exon
GCCGTCGGCAGGACTGTGGTGAGAACAAGATGGTGCTGCCCAAGGGCTTTTCTCCCG
Seq C2 exon
ATCTGGTGGCTGACCTGCTGAAGGAGCTGTCCAATCACAATGAGCGTGTGGAGGAGAGGAAAGGAGCGCTGATCGAGCTGTTGAAGATCACCCGCGAGGACAGTCTGGCTGTGTGGGACGAACACTTCAAAACTATCCTACTGCTGCTGTTGGAGACACTTGGGGACAAGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010280_CASSETTE7
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=0.921 C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
PF064797=Ribonuc_2-5A=PU(18.2=73.7),PF127172=Cnd1=PU(0.1=0.0)
C2:
PF064797=Ribonuc_2-5A=FE(74.0=100),PF127172=Cnd1=FE(54.3=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTTTGCACCCTACGGCTA
R:
CGCTCATTGTGATTGGACAGC
Band lengths:
147-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]