DreEX0021944 @ danRer10
Exon Skipping
Gene
ENSDARG00000020345 | clasp2
Description
cytoplasmic linker associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2343]
Coordinates
chr19:43206067-43212913:+
Coord C1 exon
chr19:43206067-43206123
Coord A exon
chr19:43209464-43209466
Coord C2 exon
chr19:43212750-43212913
Length
3 bp
Sequences
Splice sites
3' ss Seq
ACCCTGTGGTGCATCTGTAGAGA
3' ss Score
5.94
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CGTGATCCCAGAGGCTTCGGCACGGTAGAATCCGGTATCAGTTCTGCCTCGTTTAAG
Seq A exon
AGA
Seq C2 exon
GTGTTCAGCATGTTTCTGGAGACGCTGGTGGACTTCATTGCTGTTCATAAAGAGGATCTGCAGGACTGGCTCTTCGTGCTCCTCACACAGCTGCTGAAGAAAATGGGAGCGGATCTGCTCGGCTCAGTACAAGCCAAAGTACAGAAAGCCCTGGACGTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020345-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.895 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF050048=IFRD=FE(0.7=100),PF116403=TAN=FE(1.2=100)
C2:
PF123483=CLASP_N=FE(24.0=100),PF046827=Herpes_BTRF1=PD(56.0=91.1)
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGGTATCAGTTCTGCCTCG
R:
GAAGAGCCAGTCCTGCAGATC
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]