DreEX0022617 @ danRer10
Exon Skipping
Gene
ENSDARG00000033345 | cntln
Description
centlein, centrosomal protein [Source:ZFIN;Acc:ZDB-GENE-090313-409]
Coordinates
chr1:26320314-26321158:-
Coord C1 exon
chr1:26321090-26321158
Coord A exon
chr1:26320952-26321001
Coord C2 exon
chr1:26320314-26320401
Length
50 bp
Sequences
Splice sites
3' ss Seq
GAGCTTTATTTACATCGCAGATC
3' ss Score
6.06
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
CCAAAACACGGAACTGGCGCGAGCATTTGAAAAAGACAAGGCATTTGATCGTGTTTTCGCTTTTACGAG
Seq A exon
ATCAGTACTTTAGATAAACTTCAGCCGTATCCAAGGACGCACGGCTGCAG
Seq C2 exon
GATCTCAATGGATTCCGAAGACAATGAACGTGTTTTACTTCTTAAGGAAAAGCTGATGAGTTTATCTGAAGAACTTGCTCAGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033345_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGAGCATTTGAAAAAGACA
R:
GCACTGAGCAAGTTCTTCAGA
Band lengths:
137-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]