DreEX0023046 @ danRer10
Exon Skipping
Gene
ENSDARG00000076163 | col19a1
Description
collagen, type XIX, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-090312-196]
Coordinates
chr13:38946459-38947876:+
Coord C1 exon
chr13:38946459-38946559
Coord A exon
chr13:38947657-38947701
Coord C2 exon
chr13:38947814-38947876
Length
45 bp
Sequences
Splice sites
3' ss Seq
CTCATTGCTGTGACTGATAGGGA
3' ss Score
4.81
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
AATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA
Seq A exon
GGAAAGCCTGGACCGCGTGGTGAGACAGGGATCCCTGGAGAGCCG
Seq C2 exon
GGAGAACGAGGGCCTGTGGGAGAGACTGGCTTCCCTGGACCTGAAGGGCCTCCTGGAGCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076163-'27-28,'27-27,28-28
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF0139113=Collagen=FE(21.9=100)
C2:
NA
Main Inclusion Isoform:
ENSDART00000145979fB2017
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]