DreEX0023173 @ danRer10
Exon Skipping
Gene
ENSDARG00000099930 | col27a1b
Description
collagen, type XXVII, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-100119-2]
Coordinates
chr5:64536049-64540111:-
Coord C1 exon
chr5:64540067-64540111
Coord A exon
chr5:64537012-64537065
Coord C2 exon
chr5:64536049-64536093
Length
54 bp
Sequences
Splice sites
3' ss Seq
CATTTCTGCTTTCTGTTCAGGGC
3' ss Score
9.75
5' ss Seq
AAGGTACGA
5' ss Score
9.78
Exon sequences
Seq C1 exon
GGAGATCAGGGACCAGTGGGACCAGCAGGGGCTCCAGGACTAGAG
Seq A exon
GGCAGACCTGGGAGGAAAGGTATCTCTGGCAATCCAGGGGAGGAAGGGATGAAG
Seq C2 exon
GGAGAGCCTGGAATGACTGGAAATCCTGGGATGCTTGGTGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099930_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATCAGGGACCAGTGGGAC
R:
TCTCACCAAGCATCCCAGGAT
Band lengths:
87-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]