DreEX0023328 @ danRer10
Exon Skipping
Gene
ENSDARG00000052061 | col4a6
Description
collagen, type IV, alpha 6 [Source:ZFIN;Acc:ZDB-GENE-101001-2]
Coordinates
chr7:50657326-50658954:-
Coord C1 exon
chr7:50658773-50658954
Coord A exon
chr7:50658368-50658431
Coord C2 exon
chr7:50657326-50657400
Length
64 bp
Sequences
Splice sites
3' ss Seq
TATGTTGTTCTTATCTGTAGGGT
3' ss Score
10.25
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTGATAAAGGTTTTCCAGGGCCTCCTGGACGTCCAGGATTTCCAGGACCACCTGGCTTTGCAGACCAGGCAAAGGGTTTACCTGGCCAGCCTGGAATCCCAGGTGTTCCTGGTTCATCTGGCTTCCCTGGACCCAAAGGCTTTCCTGGAGTTATGGGCTTCCCTGGCTTTTCAGGTGTGAAG
Seq A exon
GGTGATAATGGTGTCCCTGGGGTTCCTGGGTTCCCGGGTGCTCAAGGACCACCTGGTGCCAAAG
Seq C2 exon
GTGAGAAAGGTGACTCATATGCATCATCTGGACCCACTGGACCGAAGGGAAATATAGGAAATTCTGGATTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052061-'34-37,'34-36,35-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(65.0=63.9),PF0139113=Collagen=PU(54.4=60.7)
A:
PF0139113=Collagen=FE(30.9=100)
C2:
PF0139113=Collagen=PD(11.8=30.8),PF0139113=Collagen=PU(30.6=73.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTTCCTGGTTCATCTGGC
R:
ATTTCCCTTCGGTCCAGTGGG
Band lengths:
134-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]