DreEX0023405 @ danRer10
Exon Skipping
Gene
ENSDARG00000098294 | col5a3a
Description
collagen, type V, alpha 3a [Source:ZFIN;Acc:ZDB-GENE-030131-968]
Coordinates
chr3:53591861-53605718:+
Coord C1 exon
chr3:53591861-53591983
Coord A exon
chr3:53599605-53600051
Coord C2 exon
chr3:53605599-53605718
Length
447 bp
Sequences
Splice sites
3' ss Seq
TTTTGCCCCATCTACAAAAGGCC
3' ss Score
3.79
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
GGCGAGATCCAGCAGCTCCTGCTTGTGGATGATCCTCAGGCTGCGTCTGACTACTGCCAAGATTACATTCCCGATTGTGACAGTCCTTTGCCCTACAGTGCACAGAAACTGGATCCTGAGGAG
Seq A exon
GCCAGTCTCATCCATAACCTTGATGACGTCATGCAGGGAGATGAGCCTGTGAAACCAACTAAGCGTTCCAAAAAAGACCGCAAAGGCAAAAAGAACAAAAAAAGGAAAGGCAAGAAAGGCAAAAAAGAATCCCGTAAGAAGAAAAAGGAGGCTGAAGCTCTTGAAGAAGGCTTCCTCGAGGTATCTTCTAAGCTGCCGGAGTATTTAGCTCAAGAACCTGTTCGAGAAACTACACCAGCTTCAACAAAGCTACCAGATCCACCTACGACCGAGCAGCTAAAGATGCCAGTAGAGTCTCCAACAATAATGATTGATCTGATAGACTCCATACCTGACATGCCAACTCATGAACCTGACACCTATCAGGACAGCAGTCCCTCTACAAAGCCTGTGACAGATCTTGAGGACCAAGCCATTTTGGCTTCTGCATTTTCTGAGTCCCCAAAG
Seq C2 exon
CAGGAGAGGCCGATTAAAACACCAGAGGTCGAGGAGTTTAGTGATGACCTTTACGGCGATCAGCACAATGTGCTCTCAGTCTCCACAGTGACAGTCGGCCCCAATATCACTGATTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098294_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=0.980 C2=0.825
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PD(8.1=24.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGAGATCCAGCAGCTC
R:
AATCAGTGATATTGGGGCCGAC
Band lengths:
238-685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]