DreEX0023465 @ danRer10
Exon Skipping
Gene
ENSDARG00000077139 | col6a3
Description
collagen, type VI, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-070501-8]
Coordinates
chr9:24107633-24109760:-
Coord C1 exon
chr9:24109686-24109760
Coord A exon
chr9:24108306-24108386
Coord C2 exon
chr9:24107633-24107686
Length
81 bp
Sequences
Splice sites
3' ss Seq
AATCTGGTCTATTCGAGCAGAAG
3' ss Score
1.15
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
AATCAGAAGATAAGACCGTTCTTGCTCCAAGTGAAGTGATTGTGCCCTCTGCACCCTTAAGTAGACCAGAAATAA
Seq A exon
AAGCGGCAGAGCAAAAAGTTCTCGGCCCAAGTGAAGTAATAGGGATTGTGTCCTCTGCTCCGTTGAGTAAACCAGAATTAA
Seq C2 exon
TGGCTGAGCATAGTTCAAGTGCTGTTCTCCCGCCAGCACCAGCTCCAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077139_MULTIEX1-3/6=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.169 C2=0.851
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATAAGACCGTTCTTGCTCCA
R:
CTGGTGCTGGCGGGAGAA
Band lengths:
111-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]