DreEX0023467 @ danRer10
Exon Skipping
Gene
ENSDARG00000077139 | col6a3
Description
collagen, type VI, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-070501-8]
Coordinates
chr9:24105489-24107686:-
Coord C1 exon
chr9:24107633-24107686
Coord A exon
chr9:24106074-24106259
Coord C2 exon
chr9:24105489-24105551
Length
186 bp
Sequences
Splice sites
3' ss Seq
TGTATGTTTGCATGTTTCAGTTA
3' ss Score
6.38
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
TGGCTGAGCATAGTTCAAGTGCTGTTCTCCCGCCAGCACCAGCTCCAGCTCCAG
Seq A exon
TTAACACTCTTTTGGAGCCATGCTCACTTGACTTTGACACTGGACTACCATGCAAAGATTACCAAGCTAAGTGGTACTTTGACAGAAAGAATGGATTCTGTACACAGTTCTGGTATGGAGGTTGTGGAGGAAATGACAATAGGTTTGAAACTGAGTCTGATTGCCTGAAACGCTGCATGAAGACAG
Seq C2 exon
TGGCTGAGCAAAGAGCAGCTGACGAGCATATCAAAGCTGTTTTGCCGCCAGCACCAGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077139_MULTIEX1-5/6=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.851 A=0.005 C2=0.370
Domain overlap (PFAM):
C1:
NO
A:
PF0001418=Kunitz_BPTI=WD(100=85.7)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGAGCATAGTTCAAGTGCT
R:
GGCGGCAAAACAGCTTTGATA
Band lengths:
102-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]