DreEX0024209 @ danRer10
Exon Skipping
Gene
ENSDARG00000104609 | crebbpa
Description
CREB binding protein a [Source:ZFIN;Acc:ZDB-GENE-050208-439]
Coordinates
chr22:26908577-26911744:+
Coord C1 exon
chr22:26908577-26908756
Coord A exon
chr22:26908857-26909102
Coord C2 exon
chr22:26911598-26911744
Length
246 bp
Sequences
Splice sites
3' ss Seq
TGTGCCCCCTTCCCCAGCAGCAG
3' ss Score
6.98
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
ATGAACATGTCTCCAACACGAATTGCTCCAACGCAAGGGATGCTAGGAGCTCACGGAGGGAACATGGTCACGCAAACGCCCAACCAGACGCAGTTCATGACTCAACCACCGTTTCCTGCTACCACCAACACCATGAACGTCAACATGGGCCAGCCCAACTCGCAGACACCAGTTTCGCAG
Seq A exon
CAGCCGAACGCTAACCTCCCCCTGAATGCACTTGGCCCCTTGGGCCCTGCGCTAGGCTGCCCCACGCCCCCTCAGGCTCCACTGCGCGCCACACCGCCCCCCAACGCCACCGCCGCCAGCACCACTAACCTGCCAGCAGCACTGCAGCCCTCCACACCCACCCCCGCCCCTGCCCAGGCCACCCCGCCGCACATGCAGACCCAGGCTGAGCTGCCCATCCCTGGCCAGCAGCACCCTGGAACACCG
Seq C2 exon
ACTGGTGAAAACCGTGTACCCACGCCAGCGTCAGCAGCCAGCACTGAGCTGCACTCCCAGCATGCTGTGCCTGACGTACCACCCAATGACACTAAAACAGAAGAGCAGGATTACGACATGGCCGTCAAAACAGAGCCCAGCACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104609_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGAATTGCTCCAACGCAAG
R:
TTGACGGCCATGTCGTAATCC
Band lengths:
292-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]