DreEX0024849 @ danRer10
Exon Skipping
Gene
ENSDARG00000014571 | ctnnb1
Description
catenin (cadherin-associated protein), beta 1 [Source:ZFIN;Acc:ZDB-GENE-980526-362]
Coordinates
chr16:6290181-6291146:-
Coord C1 exon
chr16:6291043-6291146
Coord A exon
chr16:6290912-6290938
Coord C2 exon
chr16:6290181-6290519
Length
27 bp
Sequences
Splice sites
3' ss Seq
CCATTGTTTCCATGGAGAAGACG
3' ss Score
-4.18
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTGGCATGCAAGCCCTCGGCCTTCATCTCACAGACCCCAGCCAGCGACTGGTACAGAACTGCTTGTGGACTTTGAGGAATCTGTCAGACGCCGCCACCAAACAG
Seq A exon
ACGTCTTTAGCAGAAGTAGATGTGCAG
Seq C2 exon
GAGGGCATGGAGGGGCTCTTGGGCACCCTGGTGCAGTTGCTCGGGTCAGATGACATCAACGTGGTGACGTGTGCTGCTGGAATCCTGTCCAACCTGACCTGCAACAACTACAAAAACAAGATGATGGTGTGCCAAGTGGGTGGCATCGAGGCCCTCGTGCGCACCGTTCTTCGTGCCGGAGACAGAGAGGATATCACAGAGCCGGCTATCTGCGCTCTCCGTCACCTCACATCCAGACACCAGGATGCAGAGATGGCCCAGAATGCAGTGCGGCTGCACTATGGACTGCCTGTAGTAGTCAAACTGCTCCACCCTCCTTCACATTGGCCTCTCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014571_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0051418=Arm=PD(70.7=82.9)
A:
NO
C2:
PF0051418=Arm=WD(100=29.2),PF0051418=Arm=WD(100=38.1)
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGGAATCTGTCAGACGCC
R:
GGTTGGACAGGATTCCAGCAG
Band lengths:
127-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]