DreEX0024910 @ danRer10
Exon Skipping
Gene
ENSDARG00000003779 | ctnnd2b
Description
catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
Coordinates
chr2:30606114-30627922:-
Coord C1 exon
chr2:30627607-30627922
Coord A exon
chr2:30623132-30623188
Coord C2 exon
chr2:30606114-30606246
Length
57 bp
Sequences
Splice sites
3' ss Seq
CTCTGCCTGTCTCTTGATAGGTA
3' ss Score
12.19
5' ss Seq
AAAGTAATC
5' ss Score
0.63
Exon sequences
Seq C1 exon
ATCCAATGAACCAGTTTTGTGACCAGGTCCTGAACTTTCTGCTCTGTCCCTACTCTCCTGTTATAGCCCCTTCCTCTCCTGGTGTTGACTCCATACCCTTACAGCGCACGGGAAGCCAAAACGCCACTGGGACATTCCCTCGCGCTGGTTACGCCACTGGCCCGGGCGCTTCCACCGCCGACTACGCCAACCCGTACCGCACACTGCAGTTCTGCCCCTCTACAGACTCGCCCTACAGCAAATCAGGACCCGCTCTGCCCCCAGAGGCCACGCTAGTCAGGTCGCCCTCTGTGGACAGCATCCAGAAGGACCCCAG
Seq A exon
GTACGACCCTGAATTCCTTGTCTGGAATCAAAATCAAGCCGAGCAAAGAATGACAAA
Seq C2 exon
GGAATTTGGCTGGAGGGATCCGGAGCTGCCGGAGGTCATCCAAATGCTGCAGCACCAGTTTCCATCGGTACAGTCCAATGCTGCCGCTTACCTCCAGCACTTGTGCTTTGGAGACAACAAGATCAAATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003779_MULTIEX1-8/11=7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.611 A=0.450 C2=0.106
Domain overlap (PFAM):
C1:
PF0051418=Arm=PU(7.5=2.8)
A:
NO
C2:
PF0051418=Arm=PD(90.0=80.0),PF0051418=Arm=PU(14.6=13.3)
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTACAGCAAATCAGGACC
R:
TGCAGCATTTGGATGACCTCC
Band lengths:
138-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]