DreEX0025295 @ danRer10
Exon Skipping
Gene
ENSDARG00000044562 | cycsb
Description
cytochrome c, somatic b [Source:ZFIN;Acc:ZDB-GENE-040625-38]
Coordinates
chr6:10675162-10676997:-
Coord C1 exon
chr6:10676854-10676997
Coord A exon
chr6:10675882-10676056
Coord C2 exon
chr6:10675162-10675805
Length
175 bp
Sequences
Splice sites
3' ss Seq
ACCTCTCATTTCACTTCCAGGTA
3' ss Score
11.83
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
ATGATTGTGACGTCAAACACCGGAGCCTGCTCGCGCCTCTAAAATGAAGTGACCTTTCTCTTTCGCCCTGATATAGAATCGGTCCGCCGACCGGCAAGAGAGGAGTACTTATCAAGAACGACAATTACCTACACAGTCTAAAAG
Seq A exon
GTAAATATGGGTGACGTTGAAAAGGGCAAGAAGGTGTTCGTCCAGAAGTGCGCCCAGTGCCACACCGTTGAAAATGGAGGCAAGCATAAAGTGGGGCCAAATCTCTGGGGTCTTTTCGGTCGCAAGACTGGTCAGGCTGAGGGATTTTCCTATACAGATGCTAACAAGAGCAAAG
Seq C2 exon
GCATTGTCTGGGGTGAAGATACCTTGATGGAATATTTGGAGAACCCAAAGAAATACATTCCAGGCACAAAGATGATCTTTGCCGGGATCAAGAAGAAGGGCGAGAGAGCAGATCTTATTGCATACTTAAAGTCGGCCACATCATAATTCAGCTGGAGATCGAGGAAACGGCAATATTTAAATTAAATGTTTGTAGTTTGGATTTGAATGTCTTTAACTAACTATTATTCATATGGTGTAACTGAACACGTGGCCAGGGTTATTCATTATAACATGTGGCATGCTTCTAAAGCCGGTCCATTTTAACAGTGAAGATTTTCTTCTTTTTTGTTCGTCCATGTATGGTTAAAGGAAGAGTAAAGTTACTGCAGGTCCCTAGTGTTTCCGCTGAGGGAATGAAAACTGTCCCCTGGTTTCACAGGAGCTGTCGTACGTTAAATTATTAAGATGTGCTGAACCTAGTAAGTATTTGGATTGGAATGAGCGACTGGGAAATCAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044562-'1-1,'1-0,5-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0003416=Cytochrom_C=PU(53.0=93.0)
C2:
PF0003416=Cytochrom_C=PD(46.0=93.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGACGTCAAACACCGGAG
R:
ATCTGCTCTCTCGCCCTTCTT
Band lengths:
253-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]