DreEX0025397 @ danRer10
Exon Skipping
Gene
ENSDARG00000104811 | cyp2aa2
Description
y cytochrome P450, family 2, subfamily AA, polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-061027-232]
Coordinates
chr23:42448839-42494176:+
Coord C1 exon
chr23:42448839-42489043
Coord A exon
chr23:42492382-42492535
Coord C2 exon
chr23:42494024-42494176
Length
154 bp
Sequences
Splice sites
3' ss Seq
TGTAAATGTTTTCCAAACAGTTG
3' ss Score
8.39
5' ss Seq
TCGGTCAGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
TATTATTTACTGTCATCATGGCAAAGAAAAAAAAATCATTTATTAGAGAGGAGTTATTAAAACTATTATGTTTAGAAATGTGTTAAAAAAAATCTCTCCGTTAAACAGGGGTAACGCTTTTTTACAACCCGCAAAGTGACATAGCTTGCACTCTCCACATCTGTGATCTGATAACAGCTGAAAGGGTTAACAGCAAGTCAAACTGTTTTTTTTTTTTTTTTGTAGTCTCCTCCTCCTTGTTGCCCTGTTGTGAAGCCCCTGACCCTCTGCTGCTCTTGTATCTGTCTTGAACTCAATCTGTTATCATGTTGGCGGCTCTCCTTAAGTTAGACTTGGCCTCTGTGGGCTTGACTCTGTTCCTGGGCTTAATTTTTCTGGTTCTGTTTGAGATCTTCAGGATTTATTCATACAAAGGTCGATTTCCACCTGGTCCAACACCTCTGCCTTTTGTGGGAAACTTACCACATTTATTGAAGAACCCGATGGGCTTCAAAAGATCT
Seq A exon
TTGTCTGAATATGGAGGATTGGCCACTGTGTTTATTGGGAGAAAGCCAGCAATAAGCATCAATACAATCCAACTGGCTAAGGAAGCATTAGTACAGGATGTTTTTTCTGGAAGACCTGCTTTGCCTATTTTTGACTGGATATCTCATGGACTCG
Seq C2 exon
GTATAATAATGGTCACATTTAACCACTCTTGGAGGCAGCAGAGACGGTTCGCTCTGCACACACTCAGAAACTTTGGTCTGGGGAAGAAAACAGTAGAGGATCGAGTGTTAGAGGAAAGCCAGTATCTGATTGCTGAAATGCTCAAAGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104811-'1-1,'1-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.5=38.5)
A:
PF0006717=p450=FE(11.3=100)
C2:
PF0006717=p450=FE(11.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTAGACTTGGCCTCTGTGGG
R:
TTTCTGAGTGTGTGCAGAGCG
Band lengths:
245-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]