DreEX0025422 @ danRer10
Exon Skipping
Gene
ENSDARG00000042956 | cyp2ad6
Description
cytochrome P450, family 2, subfamily AD, polypeptide 6 [Source:ZFIN;Acc:ZDB-GENE-041001-157]
Coordinates
chr20:25629383-25631970:-
Coord C1 exon
chr20:25631821-25631970
Coord A exon
chr20:25631041-25631201
Coord C2 exon
chr20:25629383-25629559
Length
161 bp
Sequences
Splice sites
3' ss Seq
TCCTTTACATTGTCACACAGGCC
3' ss Score
7.72
5' ss Seq
CAGGTGGAG
5' ss Score
2.57
Exon sequences
Seq C1 exon
GCCTGTCCTTCAACAATGGCTATTCGTGGAGAAAGCATCAACAGTTTTCCATGAGTCACCTGAAAAATTTTGGAGAGGGGAGGAAGACTCTAGAAGAAAATAATCAACGAGAGTGCTACTTCCTGTGTGGAGCCTTCAAAGAGGAGCAGG
Seq A exon
GCCGCCCCTTTGACCCTTTGGTCAAAATCAATAATGCAGTAGCCAACGTTATCGGCTTCCTGGTGTTCGGCCATCGATATGAGTATAGTGATGTTAATTTCCAGAAGCGTCTACAGATGAGTGCGGAGTCAGTGTTTCTTACAGGATCTGTGTGGAACCAG
Seq C2 exon
CTGTATGATGCCTTCCCAGGTATAATGAAGTGGGTGCCTGGACCTCATCAGACAATCATTTCAAACTATCAAAAGTTAGCAAACTTTCTGGAAGAGAAGATTGAGCAACATAAACCAGACTGGGACATCAGCAATCCGAGAGATTATATTGATGCCTACCTAACCGAAGCAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042956_MULTIEX1-2/6=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.1=100)
A:
PF0006717=p450=FE(11.7=100)
C2:
PF0006717=p450=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAGGGGAGGAAGACTCT
R:
TCTGCTTCGGTTAGGTAGGCA
Band lengths:
253-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]