DreEX0025452 @ danRer10
Exon Skipping
Gene
ENSDARG00000042990 | cyp2p10
Description
cytochrome P450, family 2, subfamily P, polypeptide 10 [Source:ZFIN;Acc:ZDB-GENE-040120-1]
Coordinates
chr20:25688981-25694156:+
Coord C1 exon
chr20:25688981-25689141
Coord A exon
chr20:25692066-25692242
Coord C2 exon
chr20:25694015-25694156
Length
177 bp
Sequences
Splice sites
3' ss Seq
CATAATTCTTTTTCCTTTAGCTC
3' ss Score
8.29
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTCGACCCTTTAACCCTCGCTTACTTTTGAACAACGCTGTATCAAATGTGATCTGTGTGCTGGTGTTTGGTAATCGCTTTGAATATAGTGACCATCACTTCCAGAATCTGTTAAACAAAATCAATGAATCAGTGTATCTGGAAGGAAGCATCTTTGTTCAT
Seq A exon
CTCTATAACATGTTCCCGTGGCTCATGCAATTGCTGCCTGGACCACACAAGAAACTTATTACTCTGTGGCAGAGGGTGACTGACTTTGTTCGAGAGAAGGTGAATGAACACAGAGCGGATTATGATCAATCAAGTCTTCGAGACTACATTGACTGCTTTCTAGCTGAGATGGAAAAG
Seq C2 exon
GGCACTCTTGTGATTGGCAGTTTGACATCAGTGCTGTTTGATGAGTCTGAGTGGGAGACGCCTCACTCTTTTAACCCGGGTCACTTTCTGGATGCTGAGGGCAAATTCAGGAGGAGAGATGCCTTTTTACCTTTTTCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042990_MULTIEX1-3/5=2-C2
Average complexity
C3
Mappability confidence:
78%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
PF0006717=p450=FE(12.7=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACCCTTTAACCCTCGCTT
R:
TCCAGAAAGTGACCCGGGTTA
Band lengths:
252-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]