DreEX0025453 @ danRer10
Exon Skipping
Gene
ENSDARG00000042978 | cyp2p6
Description
cytochrome P450, family 2, subfamily P, polypeptide 6 [Source:ZFIN;Acc:ZDB-GENE-040426-790]
Coordinates
chr20:25664946-25665626:+
Coord C1 exon
chr20:25664946-25665095
Coord A exon
chr20:25665204-25665364
Coord C2 exon
chr20:25665450-25665626
Length
161 bp
Sequences
Splice sites
3' ss Seq
CAGTTATAATAACTTTCCAGGTC
3' ss Score
5.46
5' ss Seq
CAAGTAAAC
5' ss Score
1.87
Exon sequences
Seq C1 exon
GTTTAGTTGCTCCCAGTGGATATAAATGGAAGCAACAGAGGAGATTTGCACTCTCAACTCTTCGGAACTTTGGTTTGGGGAAGAAAAGTCTGGAGCCGTCCATCAATCTTGAATGTCACTATCTGAATGAGGCTATCTCAAATGAAAATG
Seq A exon
GTCGACCTTTTGACCCTCACTTACTTCTGAACAACGCTATCTCAAATGTGATCTGTGTGCTGGTGTTTGGTAATCGATTTGACTACAGTGACCATCACTTCCAGACTCTGCTGAACAACATCAATGAGGCTATGTATCTGGATGGAACAATTTGGGCTCAA
Seq C2 exon
CTTTATAACTCCCACCCACGGATTATGCGGCTACTGCCTGGACCACACAAGAAAAATATTACTTTGTGGAACAAAGTGATTGACTTTGCTCGAGAGAGGGTGAAAGAACACAGAGTGGATTATGATCCATCAAATCCTCGAGACTACGTTGACTGCTTTCTAGCTGAGATGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042978-'6-9,'6-6,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.0=100)
A:
PF0006717=p450=FE(11.6=100)
C2:
PF0006717=p450=FE(12.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGAACTTTGGTTTGGGGAA
R:
GCAGTCAACGTAGTCTCGAGG
Band lengths:
245-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]