DreEX0025458 @ danRer10
Exon Skipping
Gene
ENSDARG00000042980 | cyp2p7
Description
cytochrome P450, family 2, subfamily P, polypeptide 7 [Source:ZFIN;Acc:ZDB-GENE-041001-155]
Coordinates
chr20:25671434-25673014:+
Coord C1 exon
chr20:25671434-25671596
Coord A exon
chr20:25672639-25672788
Coord C2 exon
chr20:25672854-25673014
Length
150 bp
Sequences
Splice sites
3' ss Seq
AATTAATATTACATTAACAGGGT
3' ss Score
4.62
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
TTTGCTGAAAAATATGGCAAGATTTTCAGCATAAGACTTTTTGGACCAAGAATTGTAGTGTTGGATGGATATAAACTGGTAAAGGAGGTGTATTTGCAACAGGGTGACAATCTGGCTGATCGGCCCATTTTACCAATGTTTTATGACATCACTGAAGACAAAG
Seq A exon
GGTTAATTGGGTCCAATGGGTATAAATGGAAGCACCAGAGACGATTTGCACTCTCAACTTTTCGAACCTTTGGATTGGGGAAGAAAAGTCTGGAGCCGTCCATTCTCCTGGAATGCAGTTGTCTGAATGACGCCTTTTCAAATGAACAAG
Seq C2 exon
GTCGACCCTTTGACCCTCGCTTACTTCTGAACAACGCTGTCTCAAATGTGATCTGTGCGCTTGTGTTTAGTAATCGATTTGACTACAGTGACCATCATTTCCAGACTCTGTTAAAACACATCAATGAGGTCTTATATCTGGAAGGAACAGTCTGGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042980-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
PF0006717=p450=FE(11.0=100)
C2:
PF0006717=p450=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGTGTATTTGCAACAGGG
R:
CTGAGCCCAGACTGTTCCTTC
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]