DreEX0025469 @ danRer10
Exon Skipping
Gene
ENSDARG00000018485 | cyp2v1
Description
cytochrome P450, family 2, subfamily V, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-040912-139]
Coordinates
chr20:25635962-25655740:+
Coord C1 exon
chr20:25635962-25636148
Coord A exon
chr20:25653297-25653415
Coord C2 exon
chr20:25655578-25655740
Length
119 bp
Sequences
Splice sites
3' ss Seq
CCTCTTTCTGCTGGTCTCAGTCA
3' ss Score
6.07
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
AGACTGAAATGCGAAAAGGAGCAGGAGCGTAAGTGAACCAAATCTCGCCCTCCAAACTGGGTTCCTCTCCTGGACATTTGGAGAGGGTGAACTGCTGCAGCAGAGAGGTGAAGAAGAGGAAGAGCACATTACGAGCCAGCAGCTCTCCGACACAAGCTCTTTTACCTGCAAACAAATGGAATAAAAG
Seq A exon
TCAAACTGAGAAACAGAAATAAGCCACATAAAAACCTTCCTCCTGGACCCACACCTCTTCCCTTTATTGGGAATGTTTTCAACCTGGATACTTCACAACCTCATATTGACTTAACTAAG
Seq C2 exon
ATGTCGGACCACTATGGCAACATATTCAGCTTGCGTCTGGGAAGCTTAAACACAGTTGTTGTGAACACCTACAGTATGGTGAAGAAAGTTCTTAATGACCAGGGCAACTCTTTCATGTACCGCCCAGTCAATGATATCACCGAAAGAATATCCAAGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018485_MULTIEX1-1/8=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.125 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0006717=p450=PU(5.7=36.1)
C2:
PF0006717=p450=FE(11.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGTTCCTCTCCTGGACAT
R:
CTGGGCGGTACATGAAAGAGT
Band lengths:
258-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]