DreEX0025476 @ danRer10
Exon Skipping
Gene
ENSDARG00000006501 | cyp2x10.2
Description
cytochrome P450, family 2, subfamily X, polypeptide 10.2 [Source:ZFIN;Acc:ZDB-GENE-060818-12]
Coordinates
chr7:51675544-51676237:-
Coord C1 exon
chr7:51676096-51676237
Coord A exon
chr7:51676058-51676095
Coord C2 exon
chr7:51675544-51675884
Length
38 bp
Sequences
Splice sites
3' ss Seq
ATTCATGCCTTTCTCTGCAGGTG
3' ss Score
10.76
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GGGACAATTATCATCCCGTATCTGTCATCTTCTCTCAGAGAGGAAGGTCAGTGGAAGTTTCCACATGAGTTCAACCCTCAAAACTTCTTGAATGAAAAAGGAGAATTTGTGAAGAATGATGCATTCATGCCTTTCTCTGCAG
Seq A exon
GTGTGTGCTACATCAGTTCCATTAAACAGTATTATGAG
Seq C2 exon
GACCTCGTGTTTGTTTAGGAGAAAATCTAGCCCGCATGGAGCTCTTCCTCATCCTGGTCACTGTACTGCGGAGATTTCGTCTGGTCTGGCCGAAGGATGCAGGAGAGCCAGACTTCACATATATATATGGTGGGACTCAATCAGTGAAACCTTACCGTGTAATTGTAGAGCCGCGAATGCATGGAGAGGCTTGTAAATTTGTCGACTGAACATATGCTGCCTACTATTTCATGCTATACCAGGGCTGATTCGAGACATTTGGAGGCCCAATGCAAAATTTATATCAGAGTTCTGCACGGTCTCCTCTCCACCTTTCACAACAAATAAAAGCTATTGAATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006501_CASSETTE1
Average complexity
S
Mappability confidence:
100%=50=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
PF0006717=p450=PD(0.5=14.3)
C2:
PF0006717=p450=PD(12.1=78.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACATGAGTTCAACCCTCA
R:
GCTCCATGCGGGCTAGATTTT
Band lengths:
125-163
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]