DreEX0025517 @ danRer10
Exon Skipping
Gene
ENSDARG00000004964 | cyp4t8
Description
cytochrome P450, family 4, subfamily T, polypeptide 8 [Source:ZFIN;Acc:ZDB-GENE-031219-3]
Coordinates
chr16:4807144-4808982:-
Coord C1 exon
chr16:4808838-4808982
Coord A exon
chr16:4808715-4808759
Coord C2 exon
chr16:4807144-4807271
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCATTTTGTGTTATTGGCAGAAC
3' ss Score
7.37
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
TTCCGCCAGGATGGACATGATTTAGAGAAGATCGTCAAGTGGATGGAACTGTATCAGTTTGCCTTCCCTCTATGGTTTGGCCCGTCGTTGGCTGTTTTGAACATCCACCATCCGTCATATGTGAAGACCATTCTCACAACCACAG
Seq A exon
AACCCAAAGATGACTACGCATACAAGTTTTTCATCCCATGGTTAG
Seq C2 exon
GCGATGGCTTACTGGTGTCCACTGGACAGAAATGGTTCCGGCATAGACGACTGCTCACTCCTGGTTTCCATTATGACGTTTTGAAGCCTTACGTGAAACTTATTTCTGATTCAACTAAAGTCATGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004964-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.7=100)
A:
PF0006717=p450=FE(3.7=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCGTTGGCTGTTTTGAAC
R:
GAAACCAGGAGTGAGCAGTCG
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]