DreEX0025522 @ danRer10
Exon Skipping
Gene
ENSDARG00000004964 | cyp4t8
Description
cytochrome P450, family 4, subfamily T, polypeptide 8 [Source:ZFIN;Acc:ZDB-GENE-031219-3]
Coordinates
chr16:4791099-4801220:-
Coord C1 exon
chr16:4801114-4801220
Coord A exon
chr16:4800826-4801016
Coord C2 exon
chr16:4791099-4791163
Length
191 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTGTGCCGCCCACAGGAC
3' ss Score
10.74
5' ss Seq
GTGGTACTG
5' ss Score
2.53
Exon sequences
Seq C1 exon
CGGAAGTTATCAGAAAGAGGAAAGAAGTCTTGAAGATGGAGGAGGAGCAGGGCATTGTTAAAAACAGACGATATTTAGACTTTCTGGATATTCTTCTGTCTGCTCGA
Seq A exon
GACGAGCATCAGCAGGGTTTGTCAGACGAGGACATCAGAGCTGAAGTGGACACGTTCATGTTTGAGGGCCACGACACCACGGCTAGTGGAATATCCTGGATCTTCTATAATCTGGCTTGTAATCCCGAGCACCAGGAGAAATGCAGGCAGGAGATCCAGCAAGCTCTGGATGGAAAAGCCACGCTGGAGTG
Seq C2 exon
GTTGCACCATTGGAGTCAGCATTTATGGGATCCACATGAATTCCACAGTGTGGGAGAATCCATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004964_MULTIEX1-5/6=4-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.094 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(8.6=100)
A:
PF0006717=p450=FE(15.4=100)
C2:
PF0006717=p450=FE(5.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGTTATCAGAAAGAGGAAAGA
R:
TATGGATTCTCCCACACTGTG
Band lengths:
171-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]