DreEX0026408 @ danRer10
Exon Skipping
Gene
ENSDARG00000101868 | dennd1b
Description
DENN/MADD domain containing 1B [Source:ZFIN;Acc:ZDB-GENE-060503-16]
Coordinates
chr22:23261061-23318138:+
Coord C1 exon
chr22:23261061-23261125
Coord A exon
chr22:23308729-23308858
Coord C2 exon
chr22:23318095-23318138
Length
130 bp
Sequences
Splice sites
3' ss Seq
CCTGTTTCTGGCCCTGGCAGTGG
3' ss Score
7.08
5' ss Seq
AAGGTCCGT
5' ss Score
6.16
Exon sequences
Seq C1 exon
TGAGAATCCTGCAAGGACTTTTGATTTGGCTCTTCAAGTTGCGTGTCCATCATCTGAAAATGAAG
Seq A exon
TGGTTCCCATCCTCTCACCCATAAAATCAGCATAAAATTGACCTGACTCTGCCAGATCAGATGGAGGAGTTGGGCTTCAGATCCCTGGGGAGAAGGAAATTCAGTCTTTGTAAAAATATTATAAGACAAG
Seq C2 exon
ATCCGACAGTGCTGTGGAAGTTCCCTCAGGACTTTGGAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101868_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PU(0.1=0.0)
A:
NO
C2:
PF0345613=uDENN=PU(22.6=93.3)
Main Inclusion Isoform:
ENSDART00000170886fB2248
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCAAGGACTTTTGATTTGGC
R:
TGGTCTCCAAAGTCCTGAGGG
Band lengths:
101-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]