DreEX0026702 @ danRer10
Exon Skipping
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38812403-38813388:+
Coord C1 exon
chr7:38812403-38812480
Coord A exon
chr7:38812561-38812632
Coord C2 exon
chr7:38813332-38813388
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATGCGTGTTCCTCCCTTCAGTTA
3' ss Score
9.63
5' ss Seq
AGAGTGAGA
5' ss Score
2.37
Exon sequences
Seq C1 exon
CAAAAGTCTGTTGCTCGGAAAAAGTGTGCGGCTTGCAAGATCGTAGTTCACTCTATCTGCATTGAACAGCTGGAGAAG
Seq A exon
TTATTGGATTGGAATGCTCCACCTCAGGGGGAGGGGCTTGATGAGATGCCTCTCAAAGAGCCGTCATTCAGA
Seq C2 exon
ATAAACTTCAGATGTAAACCGTCTTTCAGGGAGTCAGGATCACGGAACATCCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.069 C2=0.018
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(46.3=100)
A:
PF0013017=C1_1=PD(3.7=8.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAAGTCTGTTGCTCGGAAA
R:
TGTTCCGTGATCCTGACTCCC
Band lengths:
127-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]