DreEX0026703 @ danRer10
Exon Skipping
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38813332-38817543:+
Coord C1 exon
chr7:38813332-38813388
Coord A exon
chr7:38814979-38815074
Coord C2 exon
chr7:38817475-38817543
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATCTTGCTTTGTTGGGTTAGCAA
3' ss Score
2.63
5' ss Seq
CAGGTATCA
5' ss Score
7.33
Exon sequences
Seq C1 exon
ATAAACTTCAGATGTAAACCGTCTTTCAGGGAGTCAGGATCACGGAACATCCGAGAG
Seq A exon
CAAACCTGGCGACGCAGAGCTTTCAGAGGTCGCTGTGCTTTGGAGCAAATGAGAGGTGCTGCAGCTAAATGTACTGCGCACACCTCTAACACACAG
Seq C2 exon
CCTGCAATAGTGCGACACCACTGGGTCCATCGGAGAAGACAAGAGGGCAAATGCAAACAGTGTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.072
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0013017=C1_1=PU(28.3=73.9)
Main Inclusion Isoform:
ENSDART00000093009fB2277
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCAGATGTAAACCGTCTTTCAGG
R:
TCCACACTGTTTGCATTTGCC
Band lengths:
119-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]