DreEX0026706 @ danRer10
Exon Skipping
Gene
ENSDARG00000014439 | dgkza
Description
diacylglycerol kinase, zeta a [Source:ZFIN;Acc:ZDB-GENE-111104-3]
Coordinates
chr7:38851795-38865752:+
Coord C1 exon
chr7:38851795-38851896
Coord A exon
chr7:38855329-38855385
Coord C2 exon
chr7:38865718-38865752
Length
57 bp
Sequences
Splice sites
3' ss Seq
ATTTTGTTGTTGTTTTGAAGAGC
3' ss Score
6.25
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGTTGCAGAGCTGCAAAGGAAGCGTGTTTCCAGTGACAGTTCGGTGGCAGAAGCACTTGCACACAGTGACTCGCTCAGATCAGCCAAGCCAGCTCTCTGCAG
Seq A exon
AGCTGGGGGTGTTCATCGCTCAAATACAACCGCAGCAGATTTCAAACCTACCAGCAG
Seq C2 exon
GTTTGAGAAGAGCGCTGTGAACAATGCCAACTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014439_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.524 A=0.717 C2=0.462
Domain overlap (PFAM):
C1:
PF054077=Peptidase_C27=PU(17.3=37.1)
A:
PF054077=Peptidase_C27=FE(25.3=100)
C2:
PF054077=Peptidase_C27=FE(16.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCTGCAAAGGAAGCGT
R:
CAGAGTTGGCATTGTTCACAGC
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]