DreEX0026718 @ danRer10
Exon Skipping
Gene
ENSDARG00000076025 | dgkzb
Description
diacylglycerol kinase, zeta b [Source:ZFIN;Acc:ZDB-GENE-111104-4]
Coordinates
chr25:7660490-7690697:+
Coord C1 exon
chr25:7660490-7661147
Coord A exon
chr25:7681146-7682116
Coord C2 exon
chr25:7690589-7690697
Length
971 bp
Sequences
Splice sites
3' ss Seq
CTACAATTTTCAACCAACAGCCT
3' ss Score
4.23
5' ss Seq
GTCGTATGT
5' ss Score
5.35
Exon sequences
Seq C1 exon
CTTCCTGAATCACTGGAGAAAGTGAAACAAAGAGGGGACAATCCTTTAACTTTACCAGCAGAAGAGCTGCAGTAGGTGAAAGACGAGGAAGTCGATCAGCTTATGGAGAAGAATAGAAAAAGACGTTAAAGCTGCACTTTGAGATTTACAGTACTTCCTGGTGTGTGTGTGTGTGTGTGTGTGCTGTTCTGCACCGTTGCTTGCTGAAGTCATACATTAAGTCGTATTTTAGTCGTCGTCTGCTATGATGGACTGGGCTTTATGGGACCGTGGTGTGTGTGACGGATGAAGTAGGATTGCATGTTTGAGATGGAGCGCCTTGAGGGAGAGGTGGAGGAGCTGTCCCGACCGTTGGAGGCTCTGCTGGATGGTGAAGAGCCTGGAGGTCCTGATTCTGCCTCCTCGTCCTGTTCTGACCTGTCCAACACAAAGCCTGTGGTTCAGCCCGGTCCCAACAACAACAGCAAGAGCTTCCCTGGACTGCGGCTCTTTGGTAGAAG
Seq A exon
CCTCTGGGGGGAACTTTATAAAGAGAGCGCTATCCTCCAGCCACCATGGACACTTTTTTCCGACGGCATTTTAAGAGAAAGGAAGCAGGGGACGGTGTGCATGATGACTCCTGTCGACACCGGAGACCGAGCATTGCAGTGCCAACCAGCCGTGCCCGACGGCGCTCCAGTGTCGGCCTCCCATCCAGTGCATTAACCCAGCGGCGCCGATCCAGCGTCCAACTTCAGGCATTGCCCCGAATCAACAGCAGTCAACCGGTACATCAAAAGAGCAGCGGTAGACGGAGGTCAAGTACCACCACCCTGAAAGCCAATCCTCGCTTTGCTGTGCGCCGTAAGAAAGTAGGCAAGCTTCGCAATATAGACACACACCTCCTAGGCCCATCCATGCTGCTAGCCAGTCTGATCCAAATGACTCAAGAAGAGGAAGACGATGAAGAAGGTCGCAGTCCGCTCCCAGGGCAAGTGGAGCTCAAGGGAAGCAGCTCGAAGTTCAGGAGTCACACAGATGTGCTGCTTTCTGAAGGTGACAGTGATAGTGATGACTCCAGCGAGCATTCAGAGGAACGTCAATACTCAAGGATACGCAAAGAGTGTCTGGAGGAGGCTGATGGGTCAGACTGGGGGGTCAAGGAGTCTGGTGTTTTATGCCAGCAGGACTGCCTTCCTCTGTCTGTGGTGGCGGAGCGAATCCAGGCCCATCCGCTGATTCGAGTCCCGCGCTGCCTCAGGAGGAACTCGTCCCATTATGGCCATGCGGATCCAGGACCGCATGTGCGCTACTGCCGCAGCAGCCAAAGGAGGCGTCGTAGGAGGGTCTCCACAATCTCCAAAGCAGGAAGCCCATGGCCTGGAAGAGGCCTGCCGCTGCCTAACCGAAGAAGCTCCTGTTACAGGGGTCCGGCGACTTTCAATCCTCTCCTGGGGGCTTATTATGACCCCCGATTGGAGTCCTGGAGTGGATTCTTGTC
Seq C2 exon
GAAAGCCATCGCCAAAGCTGGTGTGCAGGATAACGCTGCTCAATCCGGCACAATAACACCTGCTAAAAGTGAACCCAACAAAAAGATATGCAACACCGTGGATTGGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076025_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=0.523 C2=0.649
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000155016fB2278
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTTGCTTGCTGAAGTCAT
R:
CGTTATCCTGCACACCAGCTT
Band lengths:
343-1314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]