DreEX0027019 @ danRer10
Exon Skipping
Gene
ENSDARG00000005350 | dip2ba
Description
DIP2 disco-interacting protein 2 homolog Ba (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2305]
Coordinates
chr23:27459678-27462324:-
Coord C1 exon
chr23:27462175-27462324
Coord A exon
chr23:27460007-27460012
Coord C2 exon
chr23:27459678-27459797
Length
6 bp
Sequences
Splice sites
3' ss Seq
GTGATGCCACCTGATTGTAGGAA
3' ss Score
5.89
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
ATACCAACAGCAGTAGTGGCAGTGTCCCGCCTGACGTCACGTCCACAGCGCCCCAGGACAGGAACTCCAGAGTAGACCTGCCAGCCAACATCGCAGTGAAGGGCATAAGCCGAGGCCAGAGCCGATCCAGTATGATGGACACTGCCGGCG
Seq A exon
GAAAAG
Seq C2 exon
GTGTTCCAGCACACAGTCGTGTCTCCACTAAAATACAGCAGCTGCTTAACACGTTGAAGAGACCCAAGAGGCCTCCGCTCAGCGAGTTCTTCCTGGATGACTCTGAAGAGATCGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005350-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.805
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000168836fB2301
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTATGATGGACACTGCCGG
R:
GCCTCTTGGGTCTCTTCAACG
Band lengths:
95-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]