DreEX0027020 @ danRer10
Exon Skipping
Gene
ENSDARG00000005350 | dip2ba
Description
DIP2 disco-interacting protein 2 homolog Ba (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2305]
Coordinates
chr23:27446595-27449826:-
Coord C1 exon
chr23:27449714-27449826
Coord A exon
chr23:27449350-27449373
Coord C2 exon
chr23:27446595-27446675
Length
24 bp
Sequences
Splice sites
3' ss Seq
TCTCGTGCTCGGGCCTCTAGCTC
3' ss Score
6.16
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
TGGGAGTCGGTCCAGCTTCCATCATGGTAGGCAACCTGGTAGCAGGAAAGAGGATTGCACAGGCTAGTGGGAGAGATCTTGGGCTAATTGATGACCAGGAGCAATCCAGAAAG
Seq A exon
CTCTGTGTGTGGCCCACTAACATG
Seq C2 exon
CATCAGTTCCTGTCTGAAGCCCTGCAGTGGCGAGCGCAGACTGACCCTGATCATGTTCTCTACATGCTGCTGAATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005350_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0050123=AMP-binding=PU(4.0=70.4)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCACAGGCTAGTGGGAGA
R:
CATGATCAGGGTCAGTCTGCG
Band lengths:
115-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]