DreEX0027024 @ danRer10
Exon Skipping
Gene
ENSDARG00000016348 | dip2bb
Description
DIP2 disco-interacting protein 2 homolog Bb (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-100729-4]
Coordinates
chr6:39575389-39580301:-
Coord C1 exon
chr6:39580035-39580301
Coord A exon
chr6:39578055-39578072
Coord C2 exon
chr6:39575389-39575529
Length
18 bp
Sequences
Splice sites
3' ss Seq
TCATCATTTGTGACTGTCAGTGC
3' ss Score
5.04
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
ACTCGTCCTCTTCGTCTGATGATGAGGCGGTGTCCAGTGAAAGTGCAGGCCCTCAGCAGTCCTCAGACACTTGGATTAACAGCTCTCTGCACGGCTCTTCCACCTCCTCCTCTGCCTCCTCTACGCTCTCACATGGCGAATCTCGACCCACCCAGAACCCTCAGCCTCAGTCCCAGCAGCTGCCACCTCCACCCGCTCCTGCCCACCCGCCACACTCACACTCGCAACCCTCCGCCCTGGCAGAGGCCTTCGCCCAGACACGCATTG
Seq A exon
TGCGAAGGATAGGAAGAG
Seq C2 exon
ATCCAGTTGGAGGAGTCGGGCCTCCTGAAGTGCCATCACAAGCCCAGGCCAGAGGCTCTCGTGTGGATCTGCCGGCCAATGCTGTGGTGCGAGGCATGAGTCGAGGACAGAGCCGCTCCAGCATGATGGAGACAGCAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016348-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000044276fB2302
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCACACTCGCAACCCTC
R:
CTGGGCTTGTGATGGCACTTC
Band lengths:
102-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]