DreEX0027026 @ danRer10
Exon Skipping
Gene
ENSDARG00000016348 | dip2bb
Description
DIP2 disco-interacting protein 2 homolog Bb (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-100729-4]
Coordinates
chr6:39554511-39554963:-
Coord C1 exon
chr6:39554851-39554963
Coord A exon
chr6:39554706-39554729
Coord C2 exon
chr6:39554511-39554591
Length
24 bp
Sequences
Splice sites
3' ss Seq
ATGCTCTCGTGTGGATTCAGCTG
3' ss Score
5.42
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
TGGGAGTCGGGCCTGCCTCCATCATGGTGGGTAATTTGGTTGCTGGGAAAAGAATAGCACAGGCTGCAGGGAGAGATCTGGGACTCATTGAGGACCAAGACCTGGTCAGGAAG
Seq A exon
CTGTGCATGTGGCCTACTATGATG
Seq C2 exon
CATCAGTTCCTCACTGAAGCTTTACAGTGGAGAGCTCAAACAGATCCCGACCATACGCTTTATGTGCTTTTGAATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016348_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0050123=AMP-binding=PU(4.0=70.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGAGAGATCTGGGACTC
R:
AGCGTATGGTCGGGATCTGTT
Band lengths:
107-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]