DreEX0027028 @ danRer10
Exon Skipping
Gene
ENSDARG00000016348 | dip2bb
Description
DIP2 disco-interacting protein 2 homolog Bb (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-100729-4]
Coordinates
chr6:39570515-39575529:-
Coord C1 exon
chr6:39575389-39575529
Coord A exon
chr6:39572661-39572678
Coord C2 exon
chr6:39570515-39570634
Length
18 bp
Sequences
Splice sites
3' ss Seq
ATGTTGCTTTTCTCTGTCAGTGA
3' ss Score
7.68
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATCCAGTTGGAGGAGTCGGGCCTCCTGAAGTGCCATCACAAGCCCAGGCCAGAGGCTCTCGTGTGGATCTGCCGGCCAATGCTGTGGTGCGAGGCATGAGTCGAGGACAGAGCCGCTCCAGCATGATGGAGACAGCAGACG
Seq A exon
TGAGAAGAGTAGGCAGAG
Seq C2 exon
GTGTTCCAGTGTCCAGTCGTGTGTCCACTAAGATCCAGCAGCTTCTAAATACACTCAAACGACCCAAACGGCCACCGCTCAGTGAGTTCTTCATGGATGACCAAGAGGAGATTGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016348_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.854
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000044276fB2303
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGCTCTCGTGTGGATCTG
R:
CACGACTGGACACTGGAACAC
Band lengths:
112-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]