DreEX0027323 @ danRer10
Exon Skipping
Gene
ENSDARG00000042291 | dlx6a
Description
distal-less homeobox 6a [Source:ZFIN;Acc:ZDB-GENE-980526-448]
Coordinates
chr19:41834464-41881126:+
Coord C1 exon
chr19:41834464-41834541
Coord A exon
chr19:41855489-41855604
Coord C2 exon
chr19:41880933-41881126
Length
116 bp
Sequences
Splice sites
3' ss Seq
TCATATGTCTTTTTTTACAGTTT
3' ss Score
9.81
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GATTACGTGACGTCACTGTCGATTTTGGCCACTTGCAGCTGAACTCATCCGAGGCGCTGGACTACTACAGAAACAGAG
Seq A exon
TTTTAGTGGTACTAAAGTAAACGACAACGTCTGTCTGCTGAGTTAATGTGCATAGCTGCGCTCCAGGTTGTCTGTATGCGCAGAAAGATGTCATCACGGTGAAAACTTCATGTACA
Seq C2 exon
AACAGCAGAAAACAACAGTGATTGAAAACGGTGAAATACGTTTCAACGGAAAAGGCAAAAAGATAAGAAAACCAAGGACGATTTATTCCAGTTTGCAGCTTCAGGCATTAAATCACCGTTTCCAGCAGACTCAATACCTGGCATTACCGGAGCGCGCGGAGCTGGCTGCCTCACTCGGGCTCACACAGACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042291_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.159
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004624=Homeobox=PU(73.7=64.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTTTGGCCACTTGCAGCTG
R:
TCTGTGTGAGCCCGAGTGAG
Band lengths:
247-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]