DreEX0027780 @ danRer10
Exon Skipping
Gene
ENSDARG00000069937 | dnm2a
Description
dynamin 2a [Source:ZFIN;Acc:ZDB-GENE-050913-84]
Coordinates
chr3:50381994-50388040:+
Coord C1 exon
chr3:50381994-50382104
Coord A exon
chr3:50387484-50387537
Coord C2 exon
chr3:50387931-50388040
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACTTCAGCATTGTTTTTCAGATA
3' ss Score
6.93
5' ss Seq
ACGGTATTG
5' ss Score
4.64
Exon sequences
Seq C1 exon
GTGATCCGTAAAGGCTGGTTAACCCTGAACATCAGCATCATGAAAGGAGGTTCAAAGGAGTACTGGTTCGTCCTGACTGCCGAATCGCTGTCCTGGTACAAAGACGAGGAG
Seq A exon
ATAAACAAGAATGTTCACTTGACCTGTTTCTTCAATATCTGCAAACATATTACG
Seq C2 exon
GAAAAAGAGAAGAAATACATGCTTCCTCTGGATAACCTGAAGCTCAGAGACGTGGAGAAAGGCTTCATGTCCACTAAGCACATTTTTGCAATCTTCAACACTGAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069937_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(35.0=97.3)
A:
PF0016924=PH=FE(14.0=100)
C2:
PF0016924=PH=FE(35.0=100)
Main Inclusion Isoform:
ENSDART00000164536fB2366
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTGGTTCGTCCTGACTGC
R:
TGTGCTTAGTGGACATGAAGCC
Band lengths:
134-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]